Dr. Bharat Kwatra Comp. Precision Oncology
Skin & Melanoma

Uveal Melanoma

Uveal melanoma arises in the eye and is molecularly distinct from cutaneous melanoma. It does not carry BRAF alterations, and treatment approaches developed for skin melanoma do not transfer to it.

Disease categories

Major disease categories

  • Choroidal melanoma
  • Ciliary body melanoma
  • Iris melanoma
  • Metastatic uveal melanoma

Molecular

Molecular considerations

GNAQ and GNA11 alterations are near-universal and definitional. BAP1 loss, SF3B1 and EIF1AX alterations define prognostic groups, with BAP1 loss associated with substantially higher metastatic risk. Monosomy 3 is a long-established prognostic marker.

Fig. 1 · Biomarker panel 6 markers

Markers commonly discussed in uveal melanoma

  • GNAQ / GNA11
  • BAP1
  • SF3B1
  • EIF1AX
  • Monosomy 3
  • HLA-A*02:01 status

Not exhaustive, and not every marker is assessed in every patient. Which of these is relevant depends on the individual case and should be discussed with the treating team.

Testing

Genomic testing considerations

Prognostic molecular classification on the primary tumour is widely discussed, because it determines surveillance intensity.

Germline

Germline considerations

Germline BAP1 assessment is discussed, as BAP1 tumour predisposition syndrome carries implications for relatives and for other tumour types.

Cancer genetics and hereditary risk

Molecular monitoring

ctDNA and liquid biopsy considerations

An area of research interest, particularly for detecting liver metastasis early.

More on ctDNA

Single-cell & computation

Single-cell and algorithmic approaches

Single-cell sequencing in skin malignancy is used to characterise immune infiltration and exhaustion states, which bear directly on how these tumours behave. Single-cell DNA analysis resolves clonal structure in tumours with very high mutational burden, where bulk calls can be difficult to attribute. Algorithm work includes mutational signature deconvolution, neoantigen prediction pipelines, and models of resistance emergence under targeted therapy.

scDNA-seqscRNA-seqClonal reconstructionAlgorithm developmentPipeline engineering

Technical expertise

Decisions

Treatment decision questions

Questions worth raising with a treating team when a decision is being made:

  • Has prognostic molecular testing been performed on the primary tumour?
  • Is liver surveillance in place, given the characteristic metastatic pattern?
  • Has germline BAP1 testing been discussed?

Resistance

Resistance and recurrence questions

  • Has the metastatic pattern been reassessed?

Trials

Clinical trial considerations

Uveal melanoma trials are separate from cutaneous melanoma trials; HLA type affects eligibility for some.

Clinical trial matching

When a precision oncology review may help

A review is most useful where the standard pathway has been exhausted or where the picture is more complicated than a protocol accounts for — rare presentations, treatment resistance, complex or apparently contradictory molecular findings, or a decision between several defensible options.

The output is a structured analysis and a set of questions for the treating team. It is not treatment, and it does not replace the treating oncologist.

Educational information. Medical information on this page is educational. It is not a treatment guideline and should be discussed with your treating medical team.
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Monday to Saturday, 12:00 – 18:00 · by appointment at KPCIRC, Paschim Vihar. Remote review available for patients and clinicians elsewhere.

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