Dr. Bharat Kwatra Comp. Precision Oncology
Paediatric

Paediatric Cancers

Paediatric cancers differ from adult cancers biologically, not merely in the age of the patient. They generally carry fewer mutations, are more often driven by fusions and developmental pathway alterations, and are managed within dedicated paediatric oncology services.

Disease categories

Major disease categories

  • Leukaemias of childhood
  • Neuroblastoma
  • Wilms tumour
  • Paediatric brain tumours
  • Rhabdomyosarcoma
  • Ewing sarcoma
  • Retinoblastoma
  • Hepatoblastoma

Molecular

Molecular considerations

MYCN amplification and ALK alterations are central in neuroblastoma. Fusions define several paediatric sarcomas. Medulloblastoma is divided into molecular subgroups. Retinoblastoma is defined by RB1 alteration.

Fig. 1 · Biomarker panel 6 markers

Markers commonly discussed in paediatric cancers

  • MYCN amplification
  • ALK
  • PAX3/7-FOXO1
  • EWSR1 fusions
  • RB1
  • Methylation class

Not exhaustive, and not every marker is assessed in every patient. Which of these is relevant depends on the individual case and should be discussed with the treating team.

Testing

Genomic testing considerations

Fusion-capable comprehensive profiling is frequently discussed, given how often paediatric tumours are fusion-driven.

Germline

Germline considerations

Germline predisposition is proportionally more common in paediatric cancer, and germline assessment is a standard part of the discussion — with implications for the child, for siblings and for surveillance.

Cancer genetics and hereditary risk

Molecular monitoring

ctDNA and liquid biopsy considerations

An area of active research in paediatric oncology.

More on ctDNA

Single-cell & computation

Single-cell and algorithmic approaches

Paediatric tumours are frequently driven by a single fusion or copy-number event on a quiet mutational background, which makes single-cell analysis unusually informative about developmental state rather than mutational burden. Single-cell RNA sequencing is used to place a tumour along a developmental trajectory. Algorithm work includes fusion detection, methylation classification, and analysis designed for the small cohort sizes that paediatric rarity imposes.

scDNA-seqscRNA-seqClonal reconstructionAlgorithm developmentPipeline engineering

Technical expertise

Decisions

Treatment decision questions

Questions worth raising with a treating team when a decision is being made:

  • Is care being delivered within a dedicated paediatric oncology service?
  • Has germline assessment been discussed?
  • Has fusion-capable testing been performed where relevant?

Resistance

Resistance and recurrence questions

  • Has the molecular profile been reassessed at relapse?

Trials

Clinical trial considerations

Paediatric trials are concentrated in specialist networks; international discussion is often relevant.

Clinical trial matching

When a precision oncology review may help

A review is most useful where the standard pathway has been exhausted or where the picture is more complicated than a protocol accounts for — rare presentations, treatment resistance, complex or apparently contradictory molecular findings, or a decision between several defensible options.

The output is a structured analysis and a set of questions for the treating team. It is not treatment, and it does not replace the treating oncologist.

Educational information. Medical information on this page is educational. It is not a treatment guideline and should be discussed with your treating medical team.
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Monday to Saturday, 12:00 – 18:00 · by appointment at KPCIRC, Paschim Vihar. Remote review available for patients and clinicians elsewhere.

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